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You are here: Home / COVID-19 / AIRR Community Standards v1.3 and COVID-19 AIRR-Seq Data Available

AIRR Community Standards v1.3 and COVID-19 AIRR-Seq Data Available

June 10, 2020 by Pam Borghardt

The AIRR Community, a grassroots group of immunologists, immunogeneticists and computer scientists who are dedicated to developing protocols and standards to facilitate sharing of these data is pleased to announce the release of v1.3 of the AIRR Standards, including v1.0 of the AIRR Data Commons API (ADC API) to query AIRR compliant data repositories. The AIRR Community also notes that the first repositories in the AIRR Data Commons, based completely on AIRR Standards, are now in production, with the iReceptor Public Archive and VDJServer repositories early adopters of these AIRR Standards. With the release of v3.0 of the iReceptor Scientific Gateway, it is possible for researchers to query the AIRR Data Commons, greatly expanding the ability of researchers to find and analyze AIRR-seq data in support of biomedical research and improving patient care.

The AIRR Community is also pleased to announce the availability of the first COVID-19 AIRR-seq data sets in the AIRR Data Commons. The COVID-19 data is from the Nielsen et al. paper and is currently stored in the community based AIRR COVID-19 repository and is searchable through the iReceptor Scientific Gateway (gateway.ireceptor.org). More studies from COVID-19 patients will be added in the coming weeks. The AIRR Community is tracking and curating COVID-19 AIRR-seq papers and data sets, including their availability in the AIRR Data Commons, on the b-t.cr web site (https://b-t.cr/t/publicly-available-covid-19-airr-seq-data-sets).

Finally, the Research Data Alliance recently released its “guidelines and recommendations on data sharing in the context of COVID-19“. AIRR Community members Brian Corrie and Christian Busse participated in the preparation of this document, and in particular the authoring of the section around recommendations for sharing COVID-19 AIRR-seq data.

Filed Under: AIRR Community, Bioinformatics, Coronavirus, COVID-19

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AIRR Community News

AIRR Community Merchandise Shop Now Open!

April 28, 2022 By Pam Borghardt

The AIRR Communications Sub-committee is pleased to announce the launch of an online merchandise shop featuring AIRR Community logo’d merchandise. Shirts, hoodies, tote bags and stickers are currently available, with additional designs to be added in the future. Be sure to check out the special Immuno-Collection while you are browsing! All products are constructed from certified […]

AIRR Community 2022 Executive Sub-committee Election

April 4, 2022 By Pam Borghardt

With each major meeting interval of the AIRR Community, elections are held for leadership positions on the AIRR-C Executive Sub-committee.  This spring, per our governance, we are seeking nominations for Executive SC Chair-Elect and up to three members of the Executive SC. To nominate an individual to serve on the AIRR-C Executive SC, the nominator […]

AIRR-C WG/SC Calls

All times are in ET (Americas/New York)

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Call - Software
11:30
Wed, July 6, 2022
Call - Legal & Ethics
12:00
Mon, July 11, 2022
Call - Standards
14:00
Mon, July 11, 2022
Call - GLDB WG (Western Hemisphere)
12:00
Tue, July 19, 2022
Call - GLDB WG (Eastern Hemisphere)
10:00
Wed, July 20, 2022

Recent AIRR Publications

  • Trück J et al, Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling (eLife, 2021)
  • Arnaout RA, Prak ETL, Schwab N, Rubelt F. Adaptive Immune Receptor Repertoire Community. The Future of Blood Testing Is the Immunome. (Frontiers in Immunology, 2021).

 
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