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You are here: Home / The AIRR Community / AIRR Community Publications

AIRR Community Publications

The AIRR Community welcomes collaboration and publication by its Working Group members. AIRR-C endorsement of a manuscript is intended to certify to the scientific community that the content of the manuscript is a product of an AIRR-C effort or initiative. Since 2017 the Community has endorsed and published six papers:

  • Christley et al. The ADC API: a web API for the programmatic query of the AIRR Data Commons (Frontiers in Big Data, 2020) outlines the API (Application Programming Interface) for curating and sharing data in the AIRR Data Commons (ADC).
  • Lees et al. OGRDB: a reference database of inferred immune receptor genes introduces a new database for storing immunoglobulin and T-cell receptor genes inferred from AIRR-seq data (Nucleic Acids Research, 2020).
  • Ohlin et al. Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming (Frontiers in Immunology, 2019) summarizes recommendations developed by the IARC—focusing, to begin with, on human IGHV genes—with the goal of facilitating the acceptance of inferred allelic variants of germline IGHV genes.
  • Vander Heiden et al. AIRR Community Standardized Representations for Annotated Immune Repertoires (Frontiers in Immunology, 2018) describes the standardized data representations for storing and sharing annotated antibody and T cell receptor data.
  • Rubelt et al. Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data (Nature Immunology, 2017, 18(12):1274-1278) reports the Community’s recommendations for a minimal set of metadata that should be used to describe an AIRR-seq data set when published or when deposited in a AIRR-compliant repository.
  • Breden et al. Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data (Frontiers in Immunology, 2017) introduced the goals of the AIRR Community Initiative and urged researchers to join our efforts.

The AIRR Community gratefully acknowledges financial support for these publications from The Antibody Society.

AIRR Community News

Successful AIRR Community Meeting V

January 15, 2021 By Pam Borghardt

The fifth AIRR Community meeting (#AIRRC5) was held virtually Dec 8–10, 2020. The theme of this meeting was “Zooming in to the AIRR Community” connecting the global AIRR research community despite the pandemic for a series of Working Group & Sub-committee presentations, scientific sessions, interactive poster sessions, software tool demonstrations and networking events. AIRR Community […]

AIRR Community and PrecisionFDA COVID-19 Precision Immunology App-a-thon

December 28, 2020 By Pam Borghardt

The AIRR Community is helping to lead the PrecisionFDA COVID-19 Precision Immunology App-a-thon.   This is part of the “precisionFDA Challenges” program, which is designed to engage and improve software that analyzes NGS (next generation sequencing data) through community challenges. There were 68 bioinformaticians pre-registered for the Precision Immunology Challenge, and more are expected to join […]

AIRR-C WG/SC Calls

All times are in ET (Americas/New York)

Click here for full calendar view

Meetings SC
10:30
Tue, January 19, 2021
BioRes WG - Call
10:00
Wed, January 20, 2021
Exec SC
11:00
Thu, January 21, 2021
Comms SC
11:00
Fri, January 22, 2021
ComRepo WG - Call
10:00
Thu, January 28, 2021

Recent AIRR Publications

  • Christley et al. “The ADC API: a web API for the programmatic query of the AIRR Data Commons” (Frontiers in Big Data, 2020)
  • Lees et al. “OGRDB: a reference database of inferred immune receptor genes” (Nucleic Acids Research, 2020).

 
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