The AIRR Community welcomes collaboration and publication by its Working Group members. The AIRR-C established endorsement process of a manuscript, book chapter, or paper is intended to certify to the greater scientific community that the content of the manuscript is a product of an AIRR-C effort or initiative. Since 2017, the Community has endorsed and published the following 18 book chapters and papers (alphabetized by title):
2023
- Lees W.D. et al. AIRR Community curation and standardised representation for immunoglobulin and T cell receptor germline sets (Immunoinformatics, 2023)
2022
In order by Immunogenetics chapter:
- Eugster et al. AIRR Community Guide to Planning and Performing AIRR-Seq Experiments. (Langerak, A.W. (eds) Immunogenetics. Methods in Molecular Biology, vol 2453, Chapter 15, 2022)
- Babrak, L. et al. Adaptive Immune Receptor Repertoire (AIRR) Community Guide to TR and IG Gene Annotation. (Langerak, A.W. (eds) Immunogenetics. Methods in Molecular Biology, vol 2453, Chapter 16, 2022)
- Marquez, S. et al. Adaptive Immune Receptor Repertoire (AIRR) Community Guide to Repertoire Analysis. (Langerak, A.W. (eds) Immunogenetics. Methods in Molecular Biology, vol 2453, Chapter 17, 2022)
- Rosenfeld, A.M. et al. Bulk gDNA Sequencing of Antibody Heavy-Chain Gene Rearrangements for Detection and Analysis of B-Cell Clone Distribution: A Method by the AIRR Community. (Langerak, A.W. (eds) Immunogenetics. Methods in Molecular Biology, vol 2453, Chapter 18, 2022)
- Gupta, N. et al. Bulk Sequencing from mRNA with UMI for Evaluation of B-Cell Isotype and Clonal Evolution: A Method by the AIRR Community. (Langerak, A.W. (eds) Immunogenetics. Methods in Molecular Biology, vol 2453, Chapter 19, 2022)
- Gupta, N. et al. Single-Cell Analysis and Tracking of Antigen-Specific T Cells: Integrating Paired Chain AIRR-Seq and Transcriptome Sequencing: A Method by the AIRR Community. (Langerak, A.W. (eds) Immunogenetics. Methods in Molecular Biology, vol 2453, Chapter 20, 2022)
- Chung, CY., Gutiérrez-González, M., López Acevedo, S.N., Fahad, A.S., DeKosky, B.J., on behalf of the AIRR Community. Quality Control: Chain Pairing Precision and Monitoring of Cross-Sample Contamination: A Method by the AIRR Community. (Langerak, A.W. (eds) Immunogenetics. Methods in Molecular Biology, vol 2453, Chapter 21, 2022)
- Christley, S., Stervbo, U., Cowell, L.G., on behalf of the AIRR Community. Immune Repertoire Analysis on High-Performance Computing Using VDJServer V1: A Method by the AIRR Community. (Langerak, A.W. (eds) Immunogenetics. Methods in Molecular Biology, vol 2453, Chapter 22, 2022)
- Corrie, B.D. et al. Data Sharing and Reuse: A Method by the AIRR Community. (Langerak, A.W. (eds) Immunogenetics. Methods in Molecular Biology, vol 2453, Chapter 23, 2022)
2021
- Trück J et al, Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling (eLife, 2021)
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Arnaout RA, Prak ETL, Schwab N, Rubelt F. Adaptive Immune Receptor Repertoire Community. The Future of Blood Testing Is the Immunome. (Frontiers in Immunology, 2021).
2020
- Lees et al. OGRDB: a reference database of inferred immune receptor genes introduces a new database for storing immunoglobulin and T-cell receptor genes inferred from AIRR-seq data (Nucleic Acids Research, 2020).
- Christley et al. The ADC API: a web API for the programmatic query of the AIRR Data Commons (Frontiers in Big Data, 2020) outlines the API (Application Programming Interface) for curating and sharing data in the AIRR Data Commons (ADC).
2019
- Ohlin et al. Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming (Frontiers in Immunology, 2019) summarizes recommendations developed by the IARC—focusing, to begin with, on human IGHV genes—with the goal of facilitating the acceptance of inferred allelic variants of germline IGHV genes.
2018
- Vander Heiden et al. AIRR Community Standardized Representations for Annotated Immune Repertoires (Frontiers in Immunology, 2018) describes the standardized data representations for storing and sharing annotated antibody and T cell receptor data.
2017
- Rubelt et al. Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data (Nature Immunology, 2017) reports the Community’s recommendations for a minimal set of metadata that should be used to describe an AIRR-seq data set when published or when deposited in a AIRR-compliant repository.
- Breden et al. Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data (Frontiers in Immunology, 2017) introduced the goals of the AIRR Community Initiative and urged researchers to join our efforts.
The AIRR Community gratefully acknowledges financial support for these publications from The Antibody Society and from the academic institutions of its members.
