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You are here: Home / AIRR Community / partis is now certified as AIRR-compliant

partis is now certified as AIRR-compliant

May 3, 2023 by Edel Aron

The AIRR Community is excited to announce that partis has been certified as compliant with the AIRR-C v1.0 standard for AIRR-Seq software tools. partis is an HMM-based framework for B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction. It is built on top of the ham HMM compiler and ig-sw set of Smith-Waterman annotation tools. partis is free software under the GPL v3.

In an effort to enable rigorous and reproducible immune repertoire research at the largest scale possible, the AIRR-C Software Working Group has established a standard to validate software tools using the AIRR-C Standards and meeting a series of interoperability and quality criteria. Developers interested in certifying their tools should complete the checklist and submit it to the AIRR-C Software Working Group for evaluation and ratification by its members.

More details can be found at the website AIRR Software WG – Guidance for AIRR Software Tools.

All compliant tools will be issued a badge and listed on the website AIRR Software WG – List of Tools Certified as Compliant. The list currently includes CompAIRR, Dandelion, Immcantation, ImmuneDB, ImmuneML, Scirpy, SONAR and TRUST4 in addition to partis.

Filed Under: AIRR Community Tagged With: Adaptive Immune Receptor Repertoire Community, bioinformatics, Data Standards, diagnostics

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AIRR Community News

Join us for the next AIRR-C webinar on Dec 7th!

December 1, 2023 By Edel Aron

Explore with us the state-of-the-art in TCR-Epitope prediction. T-cells are at the heart of the immune system’s ability to distinguish between self and non-self, playing a critical role in both health and disease. Given the sheer scale of potential TCR-epitope interactions (stemming from both the enormous epitope and TCR repertoire diversity) experimental validation of each […]

The AIRR-C seminars are back on Nov 30th!

November 29, 2023 By Edel Aron

The November AIRR-C seminar is fast approaching! On November 30th at 7:00 PST/10:00 EST/16:00 CET,  Aaron Michels of the University of Colorado Anschutz Medical Campus will be presenting “Temporal Development of T cell receptor Repertoires during Childhood in Health and Type 1 Diabetes” and Julien Limenitakis of the University of Bern will be presenting “Diet […]

AIRR-C WG/SC Calls

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Common Repository WG
11:00
Thu, December 7, 2023
Meetings SC
12:00
Fri, December 8, 2023
Standards WG
14:00
Mon, December 11, 2023
Executive SC
11:00
Thu, December 21, 2023
Meetings SC
12:00
Fri, December 22, 2023

Recent AIRR Publications

Lees W.D. et al. AIRR Community curation and standardised representation for immunoglobulin and T cell receptor germline sets (Immunoinformatics, 2023)

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