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Register now for our webinar on computational mining of immune receptor germline gene loci variation

January 28, 2022 by Janice Reichert

Registration for our next webinar, “Computational mining of immune receptor germline gene loci variation“, is now open!

B and T cell receptors play a critical role in responding to pathogens and vaccination, and in the pathology of several diseases of the immune system. Gene segments at the T cell receptor and immunoglobulin loci serve as templates for the generation and expression of T and B cell receptors and antibodies. Defining genetic variation within these highly polymorphic loci is critical to furthering our understanding of immunological diseases, and informing the design of vaccines and therapeutics. However, at the genomic level, these loci have been difficult to analyze due to their repetitive nature, rich in segmental duplications, simple repeats and retrotransposon elements. To overcome this complexity, several sequencing technologies and algorithms have been developed to more fully define the spectrum of genetic variation in these immune loci in human populations and other species. This webinar includes demonstrations of three orthogonal and complementary methods. First, Dr. Corcoran will present IgDiscover, an IG and TR adaptive immune repertoire sequencing (AIRR-seq) germline inference tool that has been in use for several years and applied to multiple species. The IgDiscover output is highly reproducible and can facilitate the comparison of multiple individuals in disease cohorts to identify disease associated allelic or structural variants. Ayelet Peres will present on VDJbase and RAbHIT, two bioinformatics tools for germline variation detection from AIRR-seq using population analysis and chromosomal phasing. These tools have been used to discover germline variations affecting the expressed repertoires. Finally, Dr. Rodriguez will demonstrate an approach using long-read sequencing and a bioinformatics tool, IGenotyper, to fully characterize both coding and non-coding single-nucleotide variants, small insertions and deletions, and structural variants across IG and TCR loci in a haplotype-specific manner. This will also include discussion on how IGenotyper is being applied to survey immune loci in non-human species.

Register here!

Tools and Software to be discussed:

  • IgDiscover analyzes antibody repertoires and discovers new V genes from high-throughput sequencing reads. Heavy chains, kappa and lambda light chains are supported (to discover VH, VK and VL genes).
  • VDJbase.org – a database of adaptive immune receptor genes, genotypes, and haplotypes.
  • RAbHIT – R tool for haplotype inference from BCR and TCR repertoires.
  • VDJbase pipeline –  BCR and TCR repertoires downstream analysis for VDJbase reports.
  • IGenotyper (or IG) was developed for PacBio capture data to assemble the Immunoglobulin Heavy Chain locus (IGH), genotype the IGH genes, and identify SNPs, indels and SVs within the IGH locus.

Filed Under: Adaptive immune receptor repertoire

FDA approves KIMMTRAK® (tebentafusp-tebn) for unresectable or metastatic uveal melanoma

January 26, 2022 by Janice Reichert

On January 26, 2022, Immunocore Holdings plc announced the approval from the United States Food and Drug Administration (FDA) of KIMMTRAK® (tebentafusp-tebn) for the treatment of HLA-A*02:01-positive adult patients with unresectable or metastatic uveal melanoma (mUM). Tebentafusp (IMCgp100) is a bispecific fusion protein composed of: 1) a T cell receptor (TCR) recognizing a human leukocyte antigen (HLA)-A*02:01 complexed with a peptide derived from gp100 antigen expressed by melanoma cells, and 2) an antibody single-chain variable fragment that binds CD3 present on T cells. Developed by Immunocore, this molecule creates a bridge between tumor cells and immune cells, and thus facilitates tumor-cell killing by T cells. As the TCR domain recognizes a peptide presented on HLA-A*02:01, tebentafusp can only be used to treated patients expressing this HLA type. Tebentafusp has been granted Breakthrough Therapy, Fast Track, and Orphan Drug designations by the FDA.

The marketing applications are based on a late-stage clinical trial (NCT03070392) that enrolled 378 patients with advanced uveal melanoma who were HLA-A*0201–positive. In the study, patients were randomized 2:1 to receive tebentafusp or investigator’s choice of therapy (either pembrolizumab, ipilimumab, or dacarbazine). Tebentafusp was administered at a dose of 20 micrograms on cycle 1 Day 1, then 30 micrograms on cycle 1 Day 8, then 68 micrograms on cycle 1 Day 15 and weekly thereafter by IV infusion over 15 minutes until confirmed disease progression or unacceptable toxicity. The primary outcome measure is overall survival. As reported in September 2021, the OS Hazard Ratio in the intent-to-treat population favored KIMMTRAK, HR=0.51 (95% CI: 0.37, 0.71); p< 0.0001, over investigator’s choice (82% pembrolizumab; 13% ipilimumab; 6% dacarbazine). Moreover, the 1-year survival rate was 73% for patients in the experimental arm vs. 59% in the investigator’s choice arm.

The European Medicines Agency, the United Kingdom’s Medicines and Healthcare Regulatory Agency, Health Canada, and the Australian Government Department of Health Therapeutic Goods Administration have accepted the submission of Marketing Authorisation Applications for tebentafusp.

KIMMTRAK is the 1st antibody-based therapeutic granted a first approval for marketing in the EU or US in 2022. Explore our searchable table of antibody therapeutics approved in the EU or US for details.

Filed Under: Antibody therapeutic, Food and Drug Administration Tagged With: approved antibodies, Food and Drug Administration, melanoma, tebentafusp

“Antibodies to Watch in 2022” is now online!

January 17, 2022 by Janice Reichert

In this 13th installment of the annual ‘Antibodies to Watch’ article series, we discuss key events in commercial antibody therapeutics development that occurred in 2021 and forecast events that might occur in 2022. Regulatory review of antibody therapeutics that target the SARS-CoV-2 coronavirus proceeded at an unprecedented pace in 2021, resulting in both emergency use authorizations and full approvals for sotrovimab, regdanvimab, REGEN-COV2, as well as others, in numerous countries. As of November 1, a total of 11 antibody therapeutics had been granted first approvals in either the United States or European Union in 2021 (evinacumab, dostarlimab loncastuximab tesirine, amivantamab, aducanumab, tralokinumab, anifrolumab, bimekizumab, tisotumab vedotin, regdanvimab, REGEN-COV2). The first global approvals of seven products, however, were granted elsewhere, including Japan (pabinafusp alfa), China (disitamab vedotin, penpulimab, zimberelimab), Australia (sotrovimab, REGEN-COV2), or the Republic of Korea (regdanvimab).

Globally, at least 27 novel antibody therapeutics are undergoing review by regulatory agencies. First actions by the Food and Drug Administration on the biologics license applications for faricimab, sutimlimab, tebentafusp, relatlimab, sintilimab, ublituximab and tezepelumab are expected in the first quarter of 2022. Finally, our data show that, with antibodies for COVID-19 excluded, the late-stage commercial clinical pipeline of antibody therapeutics grew by over 30% in the past year. Of those in late-stage development, marketing applications for at least 22 may occur by the end of 2022.

The full article can be viewed and downloaded here.

Don’t miss the Supplemental Tables, which include data for 115 antibody therapeutics in late-stage clinical studies!

Filed Under: Uncategorized

FDA approves Solensia (frunevetmab) for osteoarthritis pain in cats

January 13, 2022 by Janice Reichert

On January 13, 2022, the U.S. Food and Drug Administration (FDA) approved Solensia (frunevetmab), the first monoclonal antibody (mAb) new animal drug approved by the FDA for use in any animal species. Solensia™ is approved for the control of pain associated with osteoarthritis in cats.

Developed by Zoetis Inc., frunevetmab is a felinized immunoglobulin G mAb that targets nerve growth factor. Similar to humanization, felinization is a process in which all regions of a murine antibody are replaced with feline counterparts except for the complementarity-determining regions. Substantial evidence of effectiveness was demonstrated by the results of two field studies in cats with naturally occurring osteoarthritis. The endpoints used to evaluate the effectiveness of Solensia™ were observer-reported measures conducted by either owners (assessment of the cat’s activities before development of osteoarthritis, as well as before and after treatment) or veterinarians (orthopedic examinations before and after treatment).

Solensia™ is given by subcutaneous injection once a month and is dosed by weight range. Cats are given the full contents of 1 or 2 vials based on body weight to target a minimum dose of 1 mg/kg. Each vial contains 7 mg of frunevetmab.

At least one other mAb, lokivetmab (Cytopoint), is approved for veterinarian use in the US.  Manufactured by Zoetis, the product is used to treat atopic dermatitis in dogs, but it was approved by the US Department of Agriculture, not FDA. More information on FDA’s Center for Veterinary Medicine and the New Animal Drug Application (NADA) process can be found here.

Filed Under: Antibody therapeutic, Food and Drug Administration Tagged With: approved antibodies, Food and Drug Administration, frunevetmab

AIRR Community Meeting VI Event Information – May 17-19, 2022

January 13, 2022 by Pam Borghardt

The AIRR-C Meetings Sub-committee is pleased to share information about the upcoming AIRR-C VI Meeting which will take place in beautiful La Jolla, California, from May 17th to 19th, 2022.

Please save the date (if you haven’t already) and watch for the launch of the registration platform in early March.

This meeting will include many exciting, collaborative and mentoring activities and we are seeking your interest and participation!

We are excited to announce our keynote presenters:

Dennis Burton, Scripps Research
Gunilla Karlsson Hedestam, Karolinska Institutet
Shane Crotty, La Jolla Institute for Immunology
Atul Butte, University of California, San Francisco

Tool/Software Demos and Tutorial Sessions
These sessions will be a great opportunity for you and your team to promote your tools and software. If you are interested in either giving a brief overview demonstration or a longer tutorial, please complete this form by January 30th, 2022.

Student/Post-doc Mentoring Session and Match-ups
Are you willing to be a mentor and share your insights and exciting research with the future generation of AIRR-researchers? Please send an email indicating your interest to meetings@airrc.antibodysociety.org by February 15th, 2022. We will have a dedicated session for this activity during the meeting and are looking for volunteers.

Travel Award Grants for Student/Post-doc/Junior Faculty Members
The AIRR-C VI Meetings Sub-committee obtained an NIH grant to provide travel support for up to 10 early career faculty and student/post-doc trainees who are planning to attend the meeting. If you are interested in learning more about the criteria and applying for this opportunity contact meetings@airrc.antibodysociety.org for access to the secure application form.
Competition closes on March 31st, 2022.

Poster Sessions & Short Talks
Our fun and informative poster sessions are back. Start thinking about your poster now! Sign-up for this session will be through the meeting registration platform. Additionally, if you are interested in being considered for a short talk based on your poster abstract, be sure to indicate your interest when you register.

Industry Networking Reception and Sponsorship Opportunities
We will be hosting an industry networking reception. If you or your company are interested in participating in this event or in sponsorship opportunities please contact us at meetings@airrc.antibodysociety.org for further details.

Volunteer Opportunities
The Meetings Sub-committee is looking for volunteers to help during the Meeting with various in-person tasks. We promise lots of fun! If you are interested in getting involved please contact us at meetings@airrc.antibodysociety.org.

More detailed information on AIRR-C Meeting VI can be found on the meeting website.

If you are new to the AIRR Community (or even if you’re not) and would like to learn more about adaptive immune receptor repertoire research through in depth workshop and webinar recordings check out the AIRR Community YouTube channel. 

Follow us at #airrc6

Thank you to our sponsors!

Filed Under: AIRR Community Tagged With: Adaptive Immune Receptor Repertoire Community, Meetings

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The Adaptive Immune Receptor Repertoire Community is a research-driven group organizing around the use of high-throughput sequencing technologies to study antibody/B-cell and T-cell receptor repertoires.

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